IL_3CF5_060

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

3CF5|1|X|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_060 not in the Motif Atlas

Homologous match to IL_7A0S_063

Geometric discrepancy: 0.1105

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

3CF5|1|X|C|1703
3CF5|1|X|G|1704
3CF5|1|X|U|1705
3CF5|1|X|A|1706
3CF5|1|X|A|1707
3CF5|1|X|C|1708
*
3CF5|1|X|G|1713
3CF5|1|X|A|1714
3CF5|1|X|A|1715
3CF5|1|X|G|1716
3CF5|1|X|A|1717
3CF5|1|X|A|1718
3CF5|1|X|G|1719

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains