IL_3CF5_067

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGGAG*CGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_067 not in the Motif Atlas

Homologous match to IL_7A0S_070

Geometric discrepancy: 0.2895

The information below is about IL_7A0S_070

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

3CF5|1|X|U|1848
3CF5|1|X|G|1849
3CF5|1|X|G|1850
3CF5|1|X|A|1851
3CF5|1|X|G|1852
*
3CF5|1|X|C|1865
3CF5|1|X|G|1866
3CF5|1|X|A|1867
3CF5|1|X|A|1868
3CF5|1|X|A|1869

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain U

50S RIBOSOMAL PROTEIN L28