IL_3CF5_076

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGG*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_076 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1732

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

3CF5|1|X|G|2076
3CF5|1|X|G|2077
3CF5|1|X|G|2078
*
3CF5|1|X|U|2177
3CF5|1|X|U|2178
3CF5|1|X|C|2179

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2

Chain U

50S RIBOSOMAL PROTEIN L28