IL_3CF5_077

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAA*UGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_077 not in the Motif Atlas

Homologous match to IL_7A0S_080

Geometric discrepancy: 0.2713

The information below is about IL_7A0S_080

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_14250.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

11

Unit IDs

3CF5|1|X|C|2276
3CF5|1|X|A|2277
3CF5|1|X|A|2278
*
3CF5|1|X|U|2296
3CF5|1|X|G|2297
3CF5|1|X|U|2298
3CF5|1|X|A|2299
3CF5|1|X|G|2300

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L5

Chain L

50S RIBOSOMAL PROTEIN L18

Chain Z

5S ribosomal RNA; 5S rRNA