IL_3CF5_091

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_091 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1041

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3CF5|1|X|C|2631
3CF5|1|X|U|2632
3CF5|1|X|A|2633
3CF5|1|X|G|2634
3CF5|1|X|U|2635
3CF5|1|X|A|2636
3CF5|1|X|C|2637
*
3CF5|1|X|G|2642
3CF5|1|X|G|2643
3CF5|1|X|A|2644
3CF5|1|X|C|2645
3CF5|1|X|C|2646
3CF5|1|X|G|2647

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L6

Chain H

50S RIBOSOMAL PROTEIN L14