IL_3CF5_095

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

3CF5|1|X|A|2745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_095 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1334

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3CF5|1|X|G|2717
3CF5|1|X|A|2718
3CF5|1|X|U|2719
3CF5|1|X|A|2720
3CF5|1|X|A|2721
3CF5|1|X|C|2722
*
3CF5|1|X|G|2742
3CF5|1|X|G|2743
3CF5|1|X|A|2744
3CF5|1|X|A|2745
3CF5|1|X|G|2746
3CF5|1|X|C|2747

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain E

50S RIBOSOMAL PROTEIN L6

Chain G

50S RIBOSOMAL PROTEIN L13