IL_3CF5_099
3D structure
- PDB id
- 3CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAC*GCAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3CF5_099 not in the Motif Atlas
- Geometric match to IL_5TBW_091
- Geometric discrepancy: 0.3979
- The information below is about IL_5TBW_091
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.5
- Basepair signature
- cWW-cHS-cWW-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
3CF5|1|Z|C|19
3CF5|1|Z|A|20
3CF5|1|Z|C|21
*
3CF5|1|Z|G|66
3CF5|1|Z|C|67
3CF5|1|Z|A|68
3CF5|1|Z|G|69
Current chains
- Chain Z
- RRNA-5S RIBOSOMAL RNA
Nearby chains
- Chain D
- 50S RIBOSOMAL PROTEIN L5
- Chain L
- 50S RIBOSOMAL PROTEIN L18
- Chain S
- 50S RIBOSOMAL PROTEIN L25
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: