IL_3CMA_012

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CMA_012 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0711

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3CMA|1|0|C|290
3CMA|1|0|C|291
3CMA|1|0|G|292
3CMA|1|0|A|293
3CMA|1|0|C|294
3CMA|1|0|C|295
3CMA|1|0|G|296
*
3CMA|1|0|C|355
3CMA|1|0|C|356
3CMA|1|0|A|357
3CMA|1|0|G|358
3CMA|1|0|U|359
3CMA|1|0|A|360
3CMA|1|0|C|361
3CMA|1|0|G|362

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains