IL_3CMA_043

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGAG*CUACC

Length

10 nucleotides

Bulged bases

3CMA|1|0|G|1165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CMA_043 not in the Motif Atlas

Homologous match to IL_4V9F_043

Geometric discrepancy: 0.1528

The information below is about IL_4V9F_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

3CMA|1|0|G|1163
3CMA|1|0|U|1164
3CMA|1|0|G|1165
3CMA|1|0|A|1166
3CMA|1|0|G|1167
*
3CMA|1|0|C|1179
3CMA|1|0|U|1180
3CMA|1|0|A|1181
3CMA|1|0|C|1182
3CMA|1|0|C|1183

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain I

50S ribosomal protein L11P