IL_3CMA_057

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGGAAG*CAGGAAG

Length

13 nucleotides

Bulged bases

3CMA|1|0|G|1604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CMA_057 not in the Motif Atlas

Homologous match to IL_4V9F_058

Geometric discrepancy: 0.0639

The information below is about IL_4V9F_058

Detailed Annotation

Kink-turn

Broad Annotation

Kink-turn

Motif group

IL_32016.1

Basepair signature

cWW-tSH-tSH-tSS-tHS-L-R-cWW

Number of instances in this motif group

1

Unit IDs

3CMA|1|0|U|1587
3CMA|1|0|G|1588
3CMA|1|0|G|1589
3CMA|1|0|A|1590
3CMA|1|0|A|1591
3CMA|1|0|G|1592
*
3CMA|1|0|C|1602
3CMA|1|0|A|1603
3CMA|1|0|G|1604
3CMA|1|0|G|1605
3CMA|1|0|A|1606
3CMA|1|0|A|1607
3CMA|1|0|G|1608

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain Z

50S ribosomal protein L37Ae