IL_3CMA_058

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAGCAAC*GGC

Length

10 nucleotides

Bulged bases

3CMA|1|0|G|1730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CMA_058 not in the Motif Atlas

Homologous match to IL_4V9F_059

Geometric discrepancy: 0.0435

The information below is about IL_4V9F_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

3CMA|1|0|G|1728
3CMA|1|0|A|1729
3CMA|1|0|G|1730
3CMA|1|0|C|1731
3CMA|1|0|A|1732
3CMA|1|0|A|1733
3CMA|1|0|C|1734
*
3CMA|1|0|G|2045
3CMA|1|0|G|2046
3CMA|1|0|C|2047

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain R

50S ribosomal protein L22P

Chain X

50S ribosomal protein L31e