IL_3CMA_064

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

3CMA|1|0|A|1857, 3CMA|1|0|C|1872, 3CMA|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CMA_064 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.0443

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

3CMA|1|0|C|1854
3CMA|1|0|G|1855
3CMA|1|0|C|1856
3CMA|1|0|A|1857
3CMA|1|0|A|1858
3CMA|1|0|A|1859
3CMA|1|0|U|1860
*
3CMA|1|0|A|1869
3CMA|1|0|C|1870
3CMA|1|0|U|1871
3CMA|1|0|C|1872
3CMA|1|0|G|1873
3CMA|1|0|U|1874
3CMA|1|0|A|1875
3CMA|1|0|C|1876
3CMA|1|0|G|1877

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae