IL_3CMA_070

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

3CMA|1|0|G|1979, 3CMA|1|0|U|1985, 3CMA|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CMA_070 not in the Motif Atlas

Geometric match to IL_4V9F_071

Geometric discrepancy: 0.0584

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

3CMA|1|0|C|1975
3CMA|1|0|G|1976
3CMA|1|0|U|1977
3CMA|1|0|A|1978
3CMA|1|0|G|1979
3CMA|1|0|U|1980
3CMA|1|0|A|1981
3CMA|1|0|C|1982
3CMA|1|0|C|1983
3CMA|1|0|U|1984
3CMA|1|0|U|1985
3CMA|1|0|G|1986
*
3CMA|1|0|C|2002
3CMA|1|0|U|2003
3CMA|1|0|U|2004
3CMA|1|0|G|2005

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains