IL_3CMA_085
3D structure
- PDB id
- 3CMA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CC*GUCG
- Length
- 6 nucleotides
- Bulged bases
- 3CMA|1|0|U|2607, 3CMA|1|0|C|2608
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3CMA_085 not in the Motif Atlas
- Homologous match to IL_4V9F_088
- Geometric discrepancy: 0.0414
- The information below is about IL_4V9F_088
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 28
Unit IDs
3CMA|1|0|C|2547
3CMA|1|0|C|2548
*
3CMA|1|0|G|2606
3CMA|1|0|U|2607
3CMA|1|0|C|2608
3CMA|1|0|G|2609
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 5
- RNA (5'-R(*CP*CP*A)-3')
- Chain B
- 50S ribosomal protein L3P
- Chain J
- 50S ribosomal protein L13P
- Chain K
- 50S ribosomal protein L14P
Coloring options: