IL_3CME_012

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CME_012 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0862

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3CME|1|0|C|290
3CME|1|0|C|291
3CME|1|0|G|292
3CME|1|0|A|293
3CME|1|0|C|294
3CME|1|0|C|295
3CME|1|0|G|296
*
3CME|1|0|C|355
3CME|1|0|C|356
3CME|1|0|A|357
3CME|1|0|G|358
3CME|1|0|U|359
3CME|1|0|A|360
3CME|1|0|C|361
3CME|1|0|G|362

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains