IL_3CME_040

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUAAGUG*CUCAAA

Length

13 nucleotides

Bulged bases

3CME|1|0|C|1245, 3CME|1|0|A|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CME_040 not in the Motif Atlas

Homologous match to IL_4V9F_040

Geometric discrepancy: 0.1521

The information below is about IL_4V9F_040

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

3CME|1|0|U|1115
3CME|1|0|U|1116
3CME|1|0|A|1117
3CME|1|0|A|1118
3CME|1|0|G|1119
3CME|1|0|U|1120
3CME|1|0|G|1121
*
3CME|1|0|C|1243
3CME|1|0|U|1244
3CME|1|0|C|1245
3CME|1|0|A|1246
3CME|1|0|A|1247
3CME|1|0|A|1248

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P