IL_3CME_047

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GAUGGAAG*UGGAC

Length

13 nucleotides

Bulged bases

3CME|1|0|G|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CME_047 not in the Motif Atlas

Homologous match to IL_4V9F_048

Geometric discrepancy: 0.056

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

3CME|1|0|G|1312
3CME|1|0|A|1313
3CME|1|0|U|1314
3CME|1|0|G|1315
3CME|1|0|G|1316
3CME|1|0|A|1317
3CME|1|0|A|1318
3CME|1|0|G|1319
*
3CME|1|0|U|1338
3CME|1|0|G|1339
3CME|1|0|G|1340
3CME|1|0|A|1341
3CME|1|0|C|1342

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P

Chain Y

50S ribosomal protein L32e