IL_3CME_056

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCAACU*ACGAACG

Length

13 nucleotides

Bulged bases

3CME|1|0|C|1617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CME_056 not in the Motif Atlas

Homologous match to IL_4V9F_057

Geometric discrepancy: 0.057

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

3CME|1|0|C|1578
3CME|1|0|C|1579
3CME|1|0|A|1580
3CME|1|0|A|1581
3CME|1|0|C|1582
3CME|1|0|U|1583
*
3CME|1|0|A|1612
3CME|1|0|C|1613
3CME|1|0|G|1614
3CME|1|0|A|1615
3CME|1|0|A|1616
3CME|1|0|C|1617
3CME|1|0|G|1618

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain Z

50S ribosomal protein L37Ae