IL_3CME_057

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGGAAG*CAGGAAG

Length

13 nucleotides

Bulged bases

3CME|1|0|G|1604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CME_057 not in the Motif Atlas

Homologous match to IL_4V9F_058

Geometric discrepancy: 0.0865

The information below is about IL_4V9F_058

Detailed Annotation

Kink-turn

Broad Annotation

Kink-turn

Motif group

IL_32016.1

Basepair signature

cWW-tSH-tSH-tSS-tHS-L-R-cWW

Number of instances in this motif group

1

Unit IDs

3CME|1|0|U|1587
3CME|1|0|G|1588
3CME|1|0|G|1589
3CME|1|0|A|1590
3CME|1|0|A|1591
3CME|1|0|G|1592
*
3CME|1|0|C|1602
3CME|1|0|A|1603
3CME|1|0|G|1604
3CME|1|0|G|1605
3CME|1|0|A|1606
3CME|1|0|A|1607
3CME|1|0|G|1608

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain Z

50S ribosomal protein L37Ae