IL_3CME_070

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

3CME|1|0|G|1979, 3CME|1|0|U|1985, 3CME|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CME_070 not in the Motif Atlas

Geometric match to IL_4V9F_071

Geometric discrepancy: 0.0629

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

3CME|1|0|C|1975
3CME|1|0|G|1976
3CME|1|0|U|1977
3CME|1|0|A|1978
3CME|1|0|G|1979
3CME|1|0|U|1980
3CME|1|0|A|1981
3CME|1|0|C|1982
3CME|1|0|C|1983
3CME|1|0|U|1984
3CME|1|0|U|1985
3CME|1|0|G|1986
*
3CME|1|0|C|2002
3CME|1|0|U|2003
3CME|1|0|U|2004
3CME|1|0|G|2005

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains