IL_3CME_093

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

3CME|1|0|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CME_093 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.1668

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3CME|1|0|G|2772
3CME|1|0|G|2773
3CME|1|0|U|2774
3CME|1|0|A|2775
3CME|1|0|A|2776
3CME|1|0|G|2777
*
3CME|1|0|C|2797
3CME|1|0|G|2798
3CME|1|0|A|2799
3CME|1|0|A|2800
3CME|1|0|A|2801
3CME|1|0|C|2802

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P