IL_3CPW_013

3D structure

PDB id

3CPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the antibiotic LINEZOLID bound to the large ribosomal subunit of HALOARCULA MARISMORTUI

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CPW_013 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0464

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3CPW|1|0|C|290
3CPW|1|0|C|291
3CPW|1|0|G|292
3CPW|1|0|A|293
3CPW|1|0|C|294
3CPW|1|0|C|295
3CPW|1|0|G|296
*
3CPW|1|0|C|355
3CPW|1|0|C|356
3CPW|1|0|A|357
3CPW|1|0|G|358
3CPW|1|0|U|359
3CPW|1|0|A|360
3CPW|1|0|C|361
3CPW|1|0|G|362

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains