IL_3CPW_032

3D structure

PDB id

3CPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the antibiotic LINEZOLID bound to the large ribosomal subunit of HALOARCULA MARISMORTUI

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCGAGG*CCGUUUGACG

Length

16 nucleotides

Bulged bases

3CPW|1|0|U|1029, 3CPW|1|0|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CPW_032 not in the Motif Atlas

Geometric match to IL_6HCT_001

Geometric discrepancy: 0.3986

The information below is about IL_6HCT_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_74205.1

Basepair signature

cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

Number of instances in this motif group

3

Unit IDs

3CPW|1|0|C|936
3CPW|1|0|C|937
3CPW|1|0|G|938
3CPW|1|0|A|939
3CPW|1|0|G|940
3CPW|1|0|G|941
*
3CPW|1|0|C|1025
3CPW|1|0|C|1026
3CPW|1|0|G|1027
3CPW|1|0|U|1028
3CPW|1|0|U|1029
3CPW|1|0|U|1030
3CPW|1|0|G|1031
3CPW|1|0|A|1032
3CPW|1|0|C|1033
3CPW|1|0|G|1034

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain N

50S ribosomal protein L18e

Chain P

50S ribosomal protein L21e

Chain V

50S ribosomal protein L30P