IL_3CPW_057

3D structure

PDB id

3CPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the antibiotic LINEZOLID bound to the large ribosomal subunit of HALOARCULA MARISMORTUI

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCAACU*ACGAACG

Length

13 nucleotides

Bulged bases

3CPW|1|0|C|1617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CPW_057 not in the Motif Atlas

Homologous match to IL_4V9F_057

Geometric discrepancy: 0.0311

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

3CPW|1|0|C|1578
3CPW|1|0|C|1579
3CPW|1|0|A|1580
3CPW|1|0|A|1581
3CPW|1|0|C|1582
3CPW|1|0|U|1583
*
3CPW|1|0|A|1612
3CPW|1|0|C|1613
3CPW|1|0|G|1614
3CPW|1|0|A|1615
3CPW|1|0|A|1616
3CPW|1|0|C|1617
3CPW|1|0|G|1618

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains