IL_3CPW_065

3D structure

PDB id

3CPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the antibiotic LINEZOLID bound to the large ribosomal subunit of HALOARCULA MARISMORTUI

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

3CPW|1|0|A|1857, 3CPW|1|0|C|1872, 3CPW|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CPW_065 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.0419

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

3CPW|1|0|C|1854
3CPW|1|0|G|1855
3CPW|1|0|C|1856
3CPW|1|0|A|1857
3CPW|1|0|A|1858
3CPW|1|0|A|1859
3CPW|1|0|U|1860
*
3CPW|1|0|A|1869
3CPW|1|0|C|1870
3CPW|1|0|U|1871
3CPW|1|0|C|1872
3CPW|1|0|G|1873
3CPW|1|0|U|1874
3CPW|1|0|A|1875
3CPW|1|0|C|1876
3CPW|1|0|G|1877

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Y

50S ribosomal protein L37Ae