IL_3CUN_005

3D structure

PDB id

3CUN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Aminoacyl-tRNA synthetase ribozyme

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGG*CAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CUN_005 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2651

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3CUN|1|D|G|156
3CUN|1|D|U|157
3CUN|1|D|G|158
3CUN|1|D|G|159
*
3CUN|1|D|C|187
3CUN|1|D|A|188
3CUN|1|D|G|189
3CUN|1|D|C|190

Current chains

Chain D

RNA (92-MER)

Nearby chains

Chain B

U1 small nuclear ribonucleoprotein A