IL_3CXC_013

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_013 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0465

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3CXC|1|0|C|290
3CXC|1|0|C|291
3CXC|1|0|G|292
3CXC|1|0|A|293
3CXC|1|0|C|294
3CXC|1|0|C|295
3CXC|1|0|G|296
*
3CXC|1|0|C|355
3CXC|1|0|C|356
3CXC|1|0|A|357
3CXC|1|0|G|358
3CXC|1|0|U|359
3CXC|1|0|A|360
3CXC|1|0|C|361
3CXC|1|0|G|362

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains