IL_3CXC_020

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_020 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.0492

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3CXC|1|0|U|567
3CXC|1|0|G|568
3CXC|1|0|A|569
3CXC|1|0|C|570
3CXC|1|0|C|571
3CXC|1|0|G|572
*
3CXC|1|0|C|585
3CXC|1|0|C|586
3CXC|1|0|A|587
3CXC|1|0|G|588
3CXC|1|0|U|589
3CXC|1|0|A|590
3CXC|1|0|A|591

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain V

RIBOSOMAL PROTEIN L30