IL_3CXC_041

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAAGUG*CUCAAA

Length

13 nucleotides

Bulged bases

3CXC|1|0|C|1245, 3CXC|1|0|A|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_041 not in the Motif Atlas

Homologous match to IL_4V9F_040

Geometric discrepancy: 0.1432

The information below is about IL_4V9F_040

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

3CXC|1|0|U|1115
3CXC|1|0|U|1116
3CXC|1|0|A|1117
3CXC|1|0|A|1118
3CXC|1|0|G|1119
3CXC|1|0|U|1120
3CXC|1|0|G|1121
*
3CXC|1|0|C|1243
3CXC|1|0|U|1244
3CXC|1|0|C|1245
3CXC|1|0|A|1246
3CXC|1|0|A|1247
3CXC|1|0|A|1248

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN L6

Chain I

RIBOSOMAL PROTEIN L13