IL_3CXC_047

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_047 not in the Motif Atlas

Geometric match to IL_4V9F_047

Geometric discrepancy: 0.0481

The information below is about IL_4V9F_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

3CXC|1|0|C|1303
3CXC|1|0|U|1304
3CXC|1|0|C|1305
*
3CXC|1|0|G|1349
3CXC|1|0|U|1350
3CXC|1|0|G|1351

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L4

Chain K

RIBOSOMAL PROTEIN L15

Chain N

RIBOSOMAL PROTEIN L18E