IL_71625.5

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5		6	1-5	1-6	2-5	3-4
1	IL_8GLP_063	8GLP	0.3444	0	Isolated non-canonical cWW pair (H)	L5	LSU rRNA	U	1671	U	1672	U	1673	*	A	1682	PSU	1683	A	1684		cWW	cWw	cWW
2	IL_8GLP_196	8GLP	0.3655	0		S2	SSU rRNA	G	351	U	352	C	353	*	G	108	PSU	109	U	110		cWW	cWw	cWW
3	IL_8B0X_093	8B0X	0.2843	0	Isolated non-canonical cWW pair (H)	a	LSU rRNA	A	907	U	908	G	909	*	U	872	U	873	U	874		cWW	cWw	cWW
4	IL_7VYX_001	7VYX	0.2931	0	Isolated non-canonical cWW pair	C	sgRNA	G	11	A	12	C	13	*	G	53	C	54	C	55		cWW	ncWWa	ncWW
5	IL_4PCJ_002	4PCJ	0.2778	0	Isolated non-canonical cWW pair	A	trCUG-3('5)	C	30	U	31	G	32	*	C	4	PSU	5	G	6		cWW		cWW
6	IL_7QQX_004	7QQX	0.2531	0	Isolated non-canonical cWW pair	A+C	tracrRNA + FANCF off-target5 target strand	C	8	U	9	U	10	*	DA	11	DT	12	DG	13		cWW		cWW
7	IL_8G9Z_001	8G9Z	0.2673	0	Isolated non-canonical cWW pair	E	Selenocysteine transfer RNA	C	66\|\|A	U	67\|\|A	U	67\|\|A\|A	*	A	5\|\|A\|B	U	6\|\|A	G	7\|\|A		cWW	cWw	cWW
8	IL_3RG5_002	3RG5	0.2265	0	Isolated non-canonical cWW pair	B	Selenocysteine transfer RNA	C	66	U	67	U	67\|\|\|A	*	A	5\|\|\|B	U	6	G	7		cWW	cWw	cWW
9	IL_1MZP_001	1MZP	0.2075	0	Isolated non-canonical cWW pair	B	fragment of 23S rRNA	C	50	U	51	U	52	*	A	4	U	5	G	6		cWW	cWw	cWW
10	IL_4KZD_003	4KZD	0.2019	0	Isolated non-canonical cWW pair	R	RNA (84-MER)	C	66	U	67	C	68	*	G	17	U	18	G	19		cWW	cWw	cWW
11	IL_5MWI_001	5MWI	0.1986	0	Isolated non-canonical cWW pair	A	RNA G(CUG)8C duplex	C	2	U	3	G	4	*	C	23\|\|\|\|4_555	U	24\|\|\|\|4_555	G	25\|\|\|\|4_555		cWW	cWw	cWW
12	IL_6E7L_001	6E7L	0.1832	0	Isolated non-canonical cWW pair	A	RNA (22-mer)	C	17\|\|\|\|7_375	U	18\|\|\|\|7_375	G	19\|\|\|\|7_375	*	C	4	U	5	G	6	ncWW	cWW	cWw	cWW
13	IL_3LOA_002	3LOA	0.1772	0	Isolated non-canonical cWW pair	A+B	RNA (21-mer) + RNA (23-mer)	G	1405	5BU	1406	C	1407	*	G	1494	U	1495	C	1496		cWW	cWw	cWW
14	IL_4PCJ_001	4PCJ	0.2640	0	Isolated non-canonical cWW pair	A	trCUG-3('5)	C	1	U	2	G	3	*	C	33	U	34	G	35		cWW	cWw	cWW
15	IL_5VCI_001	5VCI	0.2802	0	Isolated non-canonical cWW pair	A+B	RNA (22-mer) + RNA (12-mer)	C	1	U	2	G	3	*	C	10	U	11	G	12		cWW	cWw	cWW
16	IL_8B0X_049	8B0X	0.2654	0		A	SSU rRNA	G	1193	U	1194	C	1195	*	G	1061	U	1062	C	1063		cWW	cWw	cWW
17	IL_4LFB_047	4LFB	0.2161	0	Isolated non-canonical cWW pair	A	SSU rRNA	G	1193	U	1194	C	1195	*	G	1061	U	1062	C	1063		cWW	cWw	cWW
18	IL_8GLP_169	8GLP	0.2150	0		L5	LSU rRNA	G	4863	U	4864	C	4865	*	G	4769	U	4770	C	4771		cWW	cWw	cWW
19	IL_7A0S_078	7A0S	0.2158	0	Isolated non-canonical cWW pair	X	LSU rRNA	U	2211	U	2212	G	2213	*	C	2068	U	2069	G	2070		cWW	cWw	cWW
20	IL_8B0X_145	8B0X	0.1957	0	Isolated non-canonical cWW pair (H)	a	LSU rRNA	U	2089	U	2090	G	2091	*	C	2236	U	2237	G	2238		cWW	cWw	cWW
21	IL_9DFE_083	9DFE	0.2231	0	Isolated non-canonical cWW pair	1A	LSU rRNA	U	2232	U	2233	G	2234	*	C	2085	U	2086	G	2087		cWW	cWw	cWW
22	IL_4V9F_047	4V9F	0.1784	0	Isolated non-canonical cWW pair	0	LSU rRNA	C	1303	U	1304	C	1305	*	G	1349	U	1350	G	1351		cWW	cWw	cWW
23	IL_5T3K_002	5T3K	0.1778	0	Isolated non-canonical cWW pair	B+A	RNA (16-mer)	G	24	75B	25	C	26	*	G	10	U	11	C	12		cWW	cWw	cWW
24	IL_4KNQ_001	4KNQ	0.1970	0	Isolated non-canonical cWW pair	B	RNA (20-mer)	C	204	C	205	G	206	*	C	216\|\|\|\|4_555	C	217\|\|\|\|4_555	G	218\|\|\|\|4_555		cWW	cwW	cWW
25	IL_9PN5_118	9PN5	0.1960	0		A1	LSU rRNA	U	3280	U	3281	U	3282	*	A	3168	U	3169	A	3170		cWW	cWw	cWW
26	IL_1T0E_002	1T0E	0.1890	0	Isolated non-canonical cWW pair	C+A	RNA (17-mer)	G	14	U	15	C	16	*	G	10\|\|A	U	11	C	12		cWW	cWw	cWW
27	IL_8FEQ_001	8FEQ	0.1608	0	Isolated non-canonical cWW pair	AAA	RNA 16mer with two separated s(2)U	U	11\|\|\|\|4_555	SUR	12\|\|\|\|4_555	C	13\|\|\|\|4_555	*	G	4	SUR	5	A	6		cWW	cWw	cWW
28	IL_1ZX7_006	1ZX7	0.1750	0	Isolated non-canonical cWW pair	F+E	RNA (14-mer)	G	24	U	25	C	26	*	G	10	U	11	C	12		cWW	cWw	cWW
29	IL_9AXU_033	9AXU	0.1417	0	Isolated non-canonical cWW pair (H)	2	LSU rRNA	U	986	U	987	U	988	*	A	997	U	998	A	999		cWW	cWw	cWW
30	IL_9H3G_040	9H3G	0.1303	0		A	LSU rRNA	U	963	U	964	PSU	965	*	A	974	PSU	975	A	976		cWW	cWw	cWW
31	IL_8OI5_037	8OI5	0.1315	0	Isolated non-canonical cWW pair (H)	1	LSU rRNA	U	950	U	951	U	952	*	A	961	U	962	A	963		cWW	cWw	cWW
32	IL_4TS2_004	4TS2	0.1276	0	Isolated non-canonical cWW pair	X+Y	Spinach aptamer RNA, bimolecular construct	G	20	U	21	G	22	*	C	77	U	78	C	79		cWW	cWw	cWW
33	IL_5WTI_002	5WTI	0.1212	0	Isolated non-canonical cWW pair	B	RNA (123-MER)	G	18	U	19	C	20	*	G	10	U	11	C	12		cWW	cWw	cWW
34	IL_8OI5_115	8OI5	0.1072	0	Isolated non-canonical cWW pair (H)	1	LSU rRNA	A	3012	U	3013	U	3014	*	A	2984	U	2985	U	2986		cWW	cWw	cWW
35	IL_9PN5_111	9PN5	0.0778	0		A1	LSU rRNA	A	3040	U	3041	U	3042	*	A	3012	U	3013	U	3014		cWW	cWw	cWW
36	IL_9AXU_108	9AXU	0.0712	0	Isolated non-canonical cWW pair (H)	2	LSU rRNA	A	3136	U	3137	U	3138	*	A	3108	U	3109	U	3110		cWW	cWw	cWW
37	IL_8GLP_316	8GLP	0.0686	0	Isolated non-canonical cWW pair (H)	L5	LSU rRNA	OMG	4618	U	4619	OMU	4620	*	A2M	4590	U	4591	C	4592		cWW	cWw	cWW
38	IL_9H3G_128	9H3G	0.0908	0		A	LSU rRNA	A	3038	U	3039	U	3040	*	A	3010	U	3011	U	3012		cWW	cWw	cWW
39	IL_3U4M_001	3U4M	0.1106	0	Isolated non-canonical cWW pair	B	LSU rRNA	C	2179	U	2180	U	2181	*	A	2108	U	2109	G	2110		cWW	cWw	cWW
40	IL_5ZTM_002	5ZTM	0.0856	0	Isolated non-canonical cWW pair	C	non-coding mRNA sequence roX2	G	157	U	158	U	159	*	A	123	U	124	C	125		cWW	cWw	cWW
41	IL_2O3Y_001	2O3Y	0.0798	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7		cWW	cWw	cWW
42	IL_5ZEG_001	5ZEG	0.0000	0		A+B	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44		cWW	cWw	cWW
43	IL_2OE5_001	2OE5	0.0779	0	Isolated non-canonical cWW pair	A+B	RNA (16-mer) + RNA (17-mer)	G	1405	U	1406	C	1407	*	G	1494	U	1495	C	1496		cWW	cWw	cWW
44	IL_2OE8_001	2OE8	0.0716	0	Isolated non-canonical cWW pair	A+B	RNA (16-mer) + RNA (17-mer)	G	1405	U	1406	C	1407	*	G	1494	U	1495	C	1496		cWW	cWw	cWW
45	IL_4KYY_003	4KYY	0.0813	0	Isolated non-canonical cWW pair	B+A	RNA 17-mer	G	5	U	6	U	7	*	A	11	U	12	C	13		cWW	cWw	cWW
46	IL_2O3Y_004	2O3Y	0.0994	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW	cWw	cWW
47	IL_3BNN_008	3BNN	0.0916	0	Isolated non-canonical cWW pair	D+C	A site of human ribosome	G	3	U	4	C	5	*	G	17	U	18	C	19		cWW	cWw	cWW
48	IL_3BNR_012	3BNR	0.1160	0	Isolated non-canonical cWW pair	D+C	A site of human mitochondrial ribosome, chain three	G	3	U	4	C	5	*	G	19	U	20	C	21		cWW	cWw	cWW
49	IL_3BNN_005	3BNN	0.1325	0	Isolated non-canonical cWW pair	D+C	A site of human ribosome	G	17	U	18	C	19	*	G	3	U	4	C	5		cWW	cWw	cWW
50	IL_4K31_001	4K31	0.1063	0	Isolated non-canonical cWW pair	C+B	RNA (23-mer)	G	19	U	20	C	21	*	G	5	U	6	C	7		cWW	cWw	cWW
51	IL_4K31_004	4K31	0.1023	0	Isolated non-canonical cWW pair	B+C	RNA (23-mer)	G	19	U	20	C	21	*	G	5	U	6	C	7		cWW	cWw	cWW
52	IL_4KYY_001	4KYY	0.0906	0	Isolated non-canonical cWW pair	A+B	RNA 17-mer	G	5	U	6	U	7	*	A	11	U	12	C	13		cWW	cWw	cWW
53	IL_4JGN_001	4JGN	0.1159	0	Isolated non-canonical cWW pair	E	RNA (20-mer)	C	505	U	506	G	507	*	C	517\|\|\|\|4_555	U	518\|\|\|\|4_555	G	519\|\|\|\|4_555		cWW	cWw	cWW
54	IL_1MFQ_002	1MFQ	0.1164	0	Isolated non-canonical cWW pair	A	SRP RNA	G	120	U	121	U	122	*	A	228	U	229	C	230		cWW	cWw	cWW
55	IL_4P3U_006	4P3U	0.1028	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW	cWw	cWW
56	IL_2O3V_001	2O3V	0.1276	0	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	42	U	43	C	44	*	G	5	U	6	C	7		cWW	cWw	cWW
57	IL_7XPL_001	7XPL	0.1462	0	Isolated non-canonical cWW pair	G+H	BMG3 RNA strand A + BMG3 RNA strand B	C	22	U	23	U	24	*	A	6	U	7	G	8		cWW	cWw	cWW
58	IL_9H3G_050	9H3G	0.1225	0		A	LSU rRNA	G	1098	U	1099	C	1100	*	G	1078	U	1079	C	1080		cWW	ncWw	cWW
59	IL_4NGF_002	4NGF	0.1491	0	Isolated non-canonical cWW pair	H+G	RNA (17-mer)	G	7	U	8	C	9	*	G	7	U	8	C	9		cWW	ncWw	cWW
60	IL_3SZX_002	3SZX	0.1587	0	Isolated non-canonical cWW pair	A+B	RNA (19-mer)	C	10	U	11	G	12	*	C	10	U	11	G	12		cWW	ncWw	cWW
61	IL_8GLP_270	8GLP	0.1496	0		S2	SSU rRNA	A	1594	U	1595	U	1596	*	A	1537	C	1538	U	1539		cWW	cWW	cWW
62	IL_9H3G_229	9H3G	0.1437	0		h1	SSU rRNA	G	1480	U	1481	A	1482	*	U	1530	PSU	1531	C	1532		cWW	cWw	cWW
63	IL_5B2P_001	5B2P	0.1438	0	Isolated non-canonical cWW pair	B	Guide RNA	G	48	U	49	A	50	*	U	24	U	25	C	26		cWW	cWw	cWW
64	IL_4P3U_007	4P3U	0.1510	0	Isolated non-canonical cWW pair	C+D	RNA (23-mer)	G	5	U	6	C	7	*	G	42	U	43	C	44		cWW	ncWw	cWW
65	IL_9H3G_193	9H3G	0.2016	0		h1	SSU rRNA	U	751	PSU	752	U	753	*	A	802	U	803	G	804		cWW	cWw	cWW
66	IL_8CRE_429	8CRE	0.1879	0	Isolated non-canonical cWW pair	CM	SSU rRNA	U	733	U	734	U	735	*	A	783	U	784	G	785		cWW	cWw	cWW
67	IL_9PN5_179	9PN5	0.1460	0		B5	SSU rRNA	U	748	U	749	U	750	*	A	799	U	800	G	801		cWW	cWw	cWW
68	IL_2ET8_004	2ET8	0.1720	0	Isolated non-canonical cWW pair	A+B	RNA (22-mer)	G	18	U	19	C	20	*	G	27	U	28	C	29		cWW	cWw	cWW
69	IL_3BNR_007	3BNR	0.1144	0	Isolated non-canonical cWW pair	D+C	A site of human mitochondrial ribosome, chain three	G	17	U	18	C	19	*	G	5	U	6	C	7		cWW	cWw	cWW
70	IL_7L0Z_001	7L0Z	0.1809	0	Isolated non-canonical cWW pair	G	RNA (69-MER)	C	58	U	59	C	60	*	G	10	U	11	G	12		cWW	cWw	cWW
71	IL_9EBV_001	9EBV	0.1447	0		A	azaaromatic riboswitch aptamer (yjdF RNA)	C	53	U	54	U	55	*	A	68	U	69	G	70		cWW	cWw	cWW
72	IL_8GLP_231	8GLP	0.1343	0	Isolated non-canonical cWW pair (H)	S2	SSU rRNA	C	856	U	857	A	858	*	U	805	U	806	G	807		cWW	cWw	cWW
73	IL_1U6B_005	1U6B	0.1747	0	Isolated non-canonical cWW pair	B	197-MER	C	100	U	101	U	102	*	A	117	U	118	G	119		cWW	cWw	cWW
74	IL_3BNT_001	3BNT	0.1930	0	Isolated non-canonical cWW pair	A	A site of human mitochondrial ribosome	G	18\|\|\|\|4_665	U	19\|\|\|\|4_665	C	20\|\|\|\|4_665	*	G	4	U	5	C	6		cWW	cWw	cWW
75	IL_2O3V_004	2O3V	0.1541	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW	cWw	cWW
76	IL_9DID_001	9DID	0.1514	0	Isolated non-canonical cWW pair	A	frameshifting pseudoknot RNA	G	9	U	10	U	11	*	A	76	C	77	C	78		cWW	cWW	cWW
77	IL_8CRE_404	8CRE	0.1771	0	Isolated non-canonical cWW pair	CM	SSU rRNA	A	204	U	205	U	206	*	A	255	C	256	U	257		cWW	cWW	cWW
78	IL_9PN5_155	9PN5	0.1834	0		B5	SSU rRNA	A	206	U	207	U	208	*	A	257	C	258	U	259		cWW	cWW	cWW
79	IL_9H3G_170	9H3G	0.2084	0		h1	SSU rRNA	A	258	C	259	U	260	*	A	203	U	204	U	205		cWW	cWW	cWW
80	IL_6SX2_001	6SX2	0.1774	0	Isolated non-canonical cWW pair	C+D	RNA (19-mer)	U	9	U	10	A	11	*	U	9	U	10	A	11		cWW	ncWw	cWW
81	IL_2O3X_004	2O3X	0.1862	0	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW	cWw	cWW
82	IL_5ZEG_004	5ZEG	0.2146	0		A+B	RNA (23-mer)	G	19	U	20	C	21	*	G	28	U	29	C	30		cWW	cWw	cWW
83	IL_9H3G_026	9H3G	0.2486	1		A	LSU rRNA	C	605	U	607	C	608	*	G	596	U	597	G	598		cWW	ncWw	cWW
84	IL_8OI5_061	8OI5	0.4663	1	Isolated non-canonical cWW pair (H)	1	LSU rRNA	U	1394	U	1396	G	1397	*	C	1406	U	1407	G	1408		cWW	cWw	cWW
85	IL_5B2P_002	5B2P	0.4826	1	Isolated non-canonical cWW pair	B	Guide RNA	G	28	U	30	G	31	*	C	44	U	45	C	46		cWW	cWw	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUC*GUC	27
CUU*AUG	7
CUG*CUG	6
AUU*AUU	4
GUU*AUC	4
CUC*GUG	3
UUG*CUG	3
UUU*AUA	3
AUU*ACU	3
UUU*AUG	2
UUU*AA	1
GUC*G(PSU)U	1
AUG*UUU	1
GAC*GCC	1
CUG*C(PSU)G	1
CUU*ATG	1
GC*GUC	1
G(75B)C*GUC	1
CCG*CCG	1
U(SUR)C*G(SUR)A	1
UU(PSU)*A(PSU)A	1
GUG*CUC	1
(OMG)U(OMU)*(A2M)UC	1
GUA*U(PSU)C	1
GUA*UUC	1
U(PSU)U*AUG	1
CUA*UUG	1
GUU*ACC	1
ACU*AUU	1
UUA*UUA	1
CAUC*GUG	1
UUUG*CUG	1
GUUG*CUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*U	65
U*(PSU)	5
U*C	4
UU*U	2
A*C	1
U*T	1
(5BU)*U	1
(75B)*U	1
C*C	1
(SUR)*(SUR)	1
(PSU)*U	1
C*U	1
AU*U	1

Release history

Release	4.10
Date	2026-05-20
Status	Updated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_71625.5 Version IL_71625.5 of this group appears in releases 4.10 to 4.10 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_71625.5 Version IL_71625.5 of this group appears in releases 4.10 to 4.10

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Csv

Json