IL_3CXC_065

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

3CXC|1|0|A|1857, 3CXC|1|0|C|1872, 3CXC|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_065 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.038

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

3CXC|1|0|C|1854
3CXC|1|0|G|1855
3CXC|1|0|C|1856
3CXC|1|0|A|1857
3CXC|1|0|A|1858
3CXC|1|0|A|1859
3CXC|1|0|U|1860
*
3CXC|1|0|A|1869
3CXC|1|0|C|1870
3CXC|1|0|U|1871
3CXC|1|0|C|1872
3CXC|1|0|G|1873
3CXC|1|0|U|1874
3CXC|1|0|A|1875
3CXC|1|0|C|1876
3CXC|1|0|G|1877

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2

Chain Y

RIBOSOMAL PROTEIN L37AE