IL_3CXC_069

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAACAC*GACGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_069 not in the Motif Atlas

Homologous match to IL_4V9F_069

Geometric discrepancy: 0.1027

The information below is about IL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

3CXC|1|0|U|1907
3CXC|1|0|G|1908
3CXC|1|0|A|1909
3CXC|1|0|A|1910
3CXC|1|0|C|1911
3CXC|1|0|A|1912
3CXC|1|0|C|1913
*
3CXC|1|0|G|1926
3CXC|1|0|A|1927
3CXC|1|0|C|1928
3CXC|1|0|G|1929
3CXC|1|0|A|1930
3CXC|1|0|A|1931
3CXC|1|0|G|1932

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L44E

Chain A

RIBOSOMAL PROTEIN L2