IL_3CXC_071

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

3CXC|1|0|G|1979, 3CXC|1|0|U|1985, 3CXC|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_071 not in the Motif Atlas

Homologous match to IL_4V9F_071

Geometric discrepancy: 0.0404

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

3CXC|1|0|C|1975
3CXC|1|0|G|1976
3CXC|1|0|U|1977
3CXC|1|0|A|1978
3CXC|1|0|G|1979
3CXC|1|0|U|1980
3CXC|1|0|A|1981
3CXC|1|0|C|1982
3CXC|1|0|C|1983
3CXC|1|0|U|1984
3CXC|1|0|U|1985
3CXC|1|0|G|1986
*
3CXC|1|0|C|2002
3CXC|1|0|U|2003
3CXC|1|0|U|2004
3CXC|1|0|G|2005

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains