IL_3CXC_091

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUAGUAC*GGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_091 not in the Motif Atlas

Geometric match to IL_4V9F_092

Geometric discrepancy: 0.049

The information below is about IL_4V9F_092

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

3CXC|1|0|A|2689
3CXC|1|0|U|2690
3CXC|1|0|A|2691
3CXC|1|0|G|2692
3CXC|1|0|U|2693
3CXC|1|0|A|2694
3CXC|1|0|C|2695
*
3CXC|1|0|G|2700
3CXC|1|0|G|2701
3CXC|1|0|A|2702
3CXC|1|0|A|2703
3CXC|1|0|C|2704
3CXC|1|0|U|2705

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain E

RIBOSOMAL PROTEIN L6

Chain J

RIBOSOMAL PROTEIN L14