IL_3CXC_092

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCACU*ACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_092 not in the Motif Atlas

Homologous match to IL_4V9F_093

Geometric discrepancy: 0.0735

The information below is about IL_4V9F_093

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

3CXC|1|0|C|2717
3CXC|1|0|C|2718
3CXC|1|0|A|2719
3CXC|1|0|C|2720
3CXC|1|0|U|2721
*
3CXC|1|0|A|2761
3CXC|1|0|C|2762
3CXC|1|0|G|2763

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain J

RIBOSOMAL PROTEIN L14

Chain T

RIBOSOMAL PROTEIN L24E