IL_3CXC_095

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

3CXC|1|0|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CXC_095 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.1703

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3CXC|1|0|G|2772
3CXC|1|0|G|2773
3CXC|1|0|U|2774
3CXC|1|0|A|2775
3CXC|1|0|A|2776
3CXC|1|0|G|2777
*
3CXC|1|0|C|2797
3CXC|1|0|G|2798
3CXC|1|0|A|2799
3CXC|1|0|A|2800
3CXC|1|0|A|2801
3CXC|1|0|C|2802

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN L6

Chain I

RIBOSOMAL PROTEIN L13