IL_3D0X_007

3D structure

PDB id

3D0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the unbound lysine riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3D0X_007 not in the Motif Atlas

Geometric match to IL_3D0U_006

Geometric discrepancy: 0.1144

The information below is about IL_3D0U_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

3D0X|1|A|G|112
3D0X|1|A|G|113
3D0X|1|A|G|114
*
3D0X|1|A|C|134
3D0X|1|A|A|135
3D0X|1|A|C|136

Current chains

Chain A

RNA (161-MER)

Nearby chains