IL_3DEG_004

3D structure

PDB id

3DEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

10.9 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

3DEG|1|G|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3DEG_004 not in the Motif Atlas

Homologous match to IL_6PRV_002

Geometric discrepancy: 0.2688

The information below is about IL_6PRV_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3DEG|1|G|G|1087
3DEG|1|G|A|1088
3DEG|1|G|A|1089
3DEG|1|G|A|1090
*
3DEG|1|G|U|1101
3DEG|1|G|C|1102

Current chains

Chain G

50S RNA helix 42-44

Nearby chains

Chain H

50S ribosomal protein L11