IL_3DIM_006

3D structure

PDB id

3DIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Cs+ Soak

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3DIM_006 not in the Motif Atlas

Geometric match to IL_3DIL_006

Geometric discrepancy: 0.0478

The information below is about IL_3DIL_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

3DIM|1|A|G|115
3DIM|1|A|G|116
3DIM|1|A|G|117
*
3DIM|1|A|C|137
3DIM|1|A|A|138
3DIM|1|A|C|139

Current chains

Chain A

RNA (174-MER)

Nearby chains