IL_3DIS_006

3D structure

PDB id

3DIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystallization of the Thermotoga maritima lysine riboswitch in free form

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3DIS_006 not in the Motif Atlas

Geometric match to IL_3DIL_006

Geometric discrepancy: 0.0827

The information below is about IL_3DIL_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

3DIS|1|A|G|115
3DIS|1|A|G|116
3DIS|1|A|G|117
*
3DIS|1|A|C|137
3DIS|1|A|A|138
3DIS|1|A|C|139

Current chains

Chain A

RNA (174-MER)

Nearby chains