IL_3DW5_001

3D structure

PDB id

3DW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modified

Experimental method

X-RAY DIFFRACTION

Resolution

0.96 Å

Loop

Sequence

CUAG(OMU)AC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3DW5_001 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.1358

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3DW5|1|A|C|2652
3DW5|1|A|U|2653
3DW5|1|A|A|2654
3DW5|1|A|G|2655
3DW5|1|A|OMU|2656
3DW5|1|A|A|2657
3DW5|1|A|C|2658
*
3DW5|1|A|G|2663
3DW5|1|A|G|2664
3DW5|1|A|A|2665
3DW5|1|A|C|2666
3DW5|1|A|C|2667
3DW5|1|A|G|2668

Current chains

Chain A

Sarcin/Ricin Domain from E. Coli 23 S rRNA

Nearby chains