IL_3EOG_002

3D structure

PDB id

3EOG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystallization showing exon recognition by a group II intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CUAAC*GGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3EOG_002 not in the Motif Atlas

Geometric match to IL_3IGI_002

Geometric discrepancy: 0.0745

The information below is about IL_3IGI_002

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

3EOG|1|A|C|70
3EOG|1|A|U|71
3EOG|1|A|A|72
3EOG|1|A|A|73
3EOG|1|A|C|74
*
3EOG|1|A|G|113
3EOG|1|A|G|114
3EOG|1|A|A|115
3EOG|1|A|C|116
3EOG|1|A|G|117

Current chains

Chain A

Group IIC intron

Nearby chains