IL_3EOG_004

3D structure

PDB id

3EOG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystallization showing exon recognition by a group II intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GG*UUGAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3EOG_004 not in the Motif Atlas

Geometric match to IL_3IGI_005

Geometric discrepancy: 0.1383

The information below is about IL_3IGI_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_26685.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

3EOG|1|A|G|128
3EOG|1|A|G|129
*
3EOG|1|A|U|234
3EOG|1|A|U|235
3EOG|1|A|G|236
3EOG|1|A|A|237
3EOG|1|A|U|238

Current chains

Chain A

Group IIC intron

Nearby chains