IL_3EOH_008

3D structure

PDB id

3EOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined group II intron structure

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UG*CUUUCUGCCAAG*G

Length

15 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3EOH_008 not in the Motif Atlas

Geometric match to IL_3IGI_008

Geometric discrepancy: 0.096

The information below is about IL_3IGI_008

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

IL_53787.1

Basepair signature

cWW-L-cWW-L-L-R-L-R-L-R-L-R

Number of instances in this motif group

1

Unit IDs

3EOH|1|A|U|168
3EOH|1|A|G|169
*
3EOH|1|A|C|197
3EOH|1|A|U|198
3EOH|1|A|U|199
3EOH|1|A|U|200
3EOH|1|A|C|201
3EOH|1|A|U|202
3EOH|1|A|G|203
3EOH|1|A|C|204
3EOH|1|A|C|205
3EOH|1|A|A|206
3EOH|1|A|A|208
3EOH|1|A|G|209
*
3EOH|1|A|G|209

Current chains

Chain A

Group IIC intron

Nearby chains