IL_3G4S_021

3D structure

PDB id

3G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Tiamulin bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3G4S_021 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.0937

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3G4S|1|0|U|567
3G4S|1|0|G|568
3G4S|1|0|A|569
3G4S|1|0|C|570
3G4S|1|0|C|571
3G4S|1|0|G|572
*
3G4S|1|0|C|585
3G4S|1|0|C|586
3G4S|1|0|A|587
3G4S|1|0|G|588
3G4S|1|0|U|589
3G4S|1|0|A|590
3G4S|1|0|A|591

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L30P