IL_3G4S_055

3D structure

PDB id

3G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Tiamulin bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAGUGAAAG*CGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3G4S_055 not in the Motif Atlas

Homologous match to IL_4V9F_054

Geometric discrepancy: 0.1375

The information below is about IL_4V9F_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41853.1

Basepair signature

cWW-L-tHH-L-tHS-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

3G4S|1|0|C|1521
3G4S|1|0|A|1522
3G4S|1|0|G|1523
3G4S|1|0|U|1524
3G4S|1|0|G|1525
3G4S|1|0|A|1526
3G4S|1|0|A|1527
3G4S|1|0|A|1528
3G4S|1|0|G|1529
*
3G4S|1|0|C|1662
3G4S|1|0|G|1663
3G4S|1|0|A|1664
3G4S|1|0|G|1665

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P