3D structure

PDB id
3G4S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of Tiamulin bound to the large ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGCAAAU*ACUCGUACG
Length
16 nucleotides
Bulged bases
3G4S|1|0|A|1857, 3G4S|1|0|C|1872, 3G4S|1|0|C|1876
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3G4S_067 not in the Motif Atlas
Homologous match to IL_4V9F_065
Geometric discrepancy: 0.0549
The information below is about IL_4V9F_065
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.5
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

3G4S|1|0|C|1854
3G4S|1|0|G|1855
3G4S|1|0|C|1856
3G4S|1|0|A|1857
3G4S|1|0|A|1858
3G4S|1|0|A|1859
3G4S|1|0|U|1860
*
3G4S|1|0|A|1869
3G4S|1|0|C|1870
3G4S|1|0|U|1871
3G4S|1|0|C|1872
3G4S|1|0|G|1873
3G4S|1|0|U|1874
3G4S|1|0|A|1875
3G4S|1|0|C|1876
3G4S|1|0|G|1877

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

Chain A
50S ribosomal protein L2P
Chain Z
50S ribosomal protein L37Ae

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2213 s