IL_3G6E_004

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGGAG*CGAAGAAC

Length

13 nucleotides

Bulged bases

3G6E|1|0|A|96

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3G6E_004 not in the Motif Atlas

Homologous match to IL_4V9F_004

Geometric discrepancy: 0.036

The information below is about IL_4V9F_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

3G6E|1|0|G|77
3G6E|1|0|G|78
3G6E|1|0|G|79
3G6E|1|0|A|80
3G6E|1|0|G|81
*
3G6E|1|0|C|93
3G6E|1|0|G|94
3G6E|1|0|A|95
3G6E|1|0|A|96
3G6E|1|0|G|97
3G6E|1|0|A|98
3G6E|1|0|A|99
3G6E|1|0|C|100

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L24P

Chain V

50S ribosomal protein L29P