IL_3G6E_012

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3G6E_012 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0444

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3G6E|1|0|C|290
3G6E|1|0|C|291
3G6E|1|0|G|292
3G6E|1|0|A|293
3G6E|1|0|C|294
3G6E|1|0|C|295
3G6E|1|0|G|296
*
3G6E|1|0|C|355
3G6E|1|0|C|356
3G6E|1|0|A|357
3G6E|1|0|G|358
3G6E|1|0|U|359
3G6E|1|0|A|360
3G6E|1|0|C|361
3G6E|1|0|G|362

Current chains

Chain 0

23S ribosomal RNA

Nearby chains